PoplarV1, Main, Exploration, bibRecord, 000E69

Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis.

Identifieur interne : 000E69 ( Main/Exploration ); précédent : 000E68; suivant : 000E70

Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis.

Auteurs : Shao-Wei Qin [République populaire de Chine] ; Ren-Jun Jiang [République populaire de Chine] ; Na Zhang [République populaire de Chine] ; Zhan-Wen Liu [République populaire de Chine] ; Cai-Lin Li [République populaire de Chine] ; Zhong-Zhong Guo [République populaire de Chine] ; Liang-Hong Bao [République populaire de Chine] ; Li-Feng Zhao [République populaire de Chine]

Source :

Scientific reports [ 2045-2322 ] ; 2018.

RBID : pubmed:30467318

Descripteurs français

English descriptors

KwdEn :
- Gene Expression Profiling (methods), Gene Expression Regulation, Plant (MeSH), Gene Regulatory Networks (MeSH), High-Throughput Nucleotide Sequencing (methods), MicroRNAs (genetics), Plant Leaves (anatomy & histology), Plant Leaves (genetics), Populus (anatomy & histology), Populus (genetics), RNA, Long Noncoding (genetics), RNA, Messenger (genetics), RNA, Plant (genetics), Sequence Analysis, RNA (methods), Whole Genome Sequencing (methods).
MESH :
- chemical , genetics : MicroRNAs, RNA, Long Noncoding, RNA, Messenger, RNA, Plant.
- anatomy & histology : Plant Leaves, Populus.
- genetics : Plant Leaves, Populus.
- methods : Gene Expression Profiling, High-Throughput Nucleotide Sequencing, Sequence Analysis, RNA, Whole Genome Sequencing.
- Gene Expression Regulation, Plant, Gene Regulatory Networks.

Abstract

The desert plant Populus euphratica Oliv. has typical heterophylly; linear (Li), lanceolate (La), ovate (Ov) and broad-ovate (Bo) leaves grow in turn as trees develop to maturity. P. euphratica is therefore a potential model organism for leaf development. To investigate the roles of RNAs (including mRNAs, miRNAs, lncRNAs and circRNAs) in the morphogenesis of P. euphratica heterophylls, juvenile heterophylls were sampled individually, and then, the expression patterns of miRNAs, mRNAs, lncRNAs and circRNAs were analysed by small RNA sequencing and strand-specific RNA sequencing. We found that 1374 mRNAs, 19 miRNAs, 71 lncRNAs and 2 circRNAs were P. euphratica heterophyll morphogenesis-associated (PHMA) RNAs; among them, 17 PHMA miRNAs could alter the expression of 46 PHMA mRNAs. Furthermore, 11 lncRNAs and 2 circRNAs interacted with 27 PHMA mRNAs according to the ceRNA hypothesis. According to GO and KEGG pathway analysis, PHMA RNAs were mainly involved in metabolism, response to stimulus and developmental processes. Our results indicated that external environmental factors and genetic factors in P. euphratica co-regulated the expression of PHMA RNAs, repressed cell division, reinforced cell growth, and ultimately resulted in the morphogenesis of P. euphratica heterophylls.

DOI: 10.1038/s41598-018-35371-x
PubMed: 30467318
PubMed Central: PMC6250686

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000B66
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Le document en format XML

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<front><div type="abstract" xml:lang="en">The desert plant Populus euphratica Oliv. has typical heterophylly; linear (Li), lanceolate (La), ovate (Ov) and broad-ovate (Bo) leaves grow in turn as trees develop to maturity. P. euphratica is therefore a potential model organism for leaf development. To investigate the roles of RNAs (including mRNAs, miRNAs, lncRNAs and circRNAs) in the morphogenesis of P. euphratica heterophylls, juvenile heterophylls were sampled individually, and then, the expression patterns of miRNAs, mRNAs, lncRNAs and circRNAs were analysed by small RNA sequencing and strand-specific RNA sequencing. We found that 1374 mRNAs, 19 miRNAs, 71 lncRNAs and 2 circRNAs were P. euphratica heterophyll morphogenesis-associated (PHMA) RNAs; among them, 17 PHMA miRNAs could alter the expression of 46 PHMA mRNAs. Furthermore, 11 lncRNAs and 2 circRNAs interacted with 27 PHMA mRNAs according to the ceRNA hypothesis. According to GO and KEGG pathway analysis, PHMA RNAs were mainly involved in metabolism, response to stimulus and developmental processes. Our results indicated that external environmental factors and genetic factors in P. euphratica co-regulated the expression of PHMA RNAs, repressed cell division, reinforced cell growth, and ultimately resulted in the morphogenesis of P. euphratica heterophylls.</div>
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<Abstract><AbstractText>The desert plant Populus euphratica Oliv. has typical heterophylly; linear (Li), lanceolate (La), ovate (Ov) and broad-ovate (Bo) leaves grow in turn as trees develop to maturity. P. euphratica is therefore a potential model organism for leaf development. To investigate the roles of RNAs (including mRNAs, miRNAs, lncRNAs and circRNAs) in the morphogenesis of P. euphratica heterophylls, juvenile heterophylls were sampled individually, and then, the expression patterns of miRNAs, mRNAs, lncRNAs and circRNAs were analysed by small RNA sequencing and strand-specific RNA sequencing. We found that 1374 mRNAs, 19 miRNAs, 71 lncRNAs and 2 circRNAs were P. euphratica heterophyll morphogenesis-associated (PHMA) RNAs; among them, 17 PHMA miRNAs could alter the expression of 46 PHMA mRNAs. Furthermore, 11 lncRNAs and 2 circRNAs interacted with 27 PHMA mRNAs according to the ceRNA hypothesis. According to GO and KEGG pathway analysis, PHMA RNAs were mainly involved in metabolism, response to stimulus and developmental processes. Our results indicated that external environmental factors and genetic factors in P. euphratica co-regulated the expression of PHMA RNAs, repressed cell division, reinforced cell growth, and ultimately resulted in the morphogenesis of P. euphratica heterophylls.</AbstractText>
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Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis.

Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis.

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